Protein Info for MMP_RS08955 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 48 PF03966: Trm112p" amino acids 6 to 40 (35 residues), 30.2 bits, see alignment E=1.8e-11

Best Hits

Swiss-Prot: 45% identical to Y2504_SHEHH: UPF0434 protein Shal_2504 (Shal_2504) from Shewanella halifaxensis (strain HAW-EB4)

KEGG orthology group: K09791, hypothetical protein (inferred from 85% identity to mmz:MmarC7_1635)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (48 amino acids)

>MMP_RS08955 hypothetical protein (Methanococcus maripaludis S2)
MKWLEELTELLECPICKGDLELLGNKLCCKKCKKVYLIKDKIPVLLDE