Protein Info for MMP_RS07300 in Methanococcus maripaludis S2

Annotation: 30S ribosomal protein S5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 TIGR01020: ribosomal protein uS5" amino acids 11 to 218 (208 residues), 330.9 bits, see alignment E=1.4e-103 PF00333: Ribosomal_S5" amino acids 57 to 121 (65 residues), 90.6 bits, see alignment E=5.2e-30 PF03719: Ribosomal_S5_C" amino acids 143 to 205 (63 residues), 81.4 bits, see alignment E=2.7e-27

Best Hits

Swiss-Prot: 100% identical to RS5_METMP: 30S ribosomal protein S5 (rps5) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K02988, small subunit ribosomal protein S5 (inferred from 100% identity to mmp:MMP1419)

Predicted SEED Role

"SSU ribosomal protein S2e (S5p)" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LXD3 at UniProt or InterPro

Protein Sequence (225 amino acids)

>MMP_RS07300 30S ribosomal protein S5 (Methanococcus maripaludis S2)
MAEKRAEKRKFNTEAWEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPDLEEQ
VLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKV
RVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAW
TKTFGDTRTTYNFAEATFDALNNLNFVRCLPNQKEKLGLTEGRVL