Protein Info for MMP_RS07255 in Methanococcus maripaludis S2

Annotation: 50S ribosomal protein L24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 119 TIGR01080: ribosomal protein uL24" amino acids 6 to 115 (110 residues), 161 bits, see alignment E=6.4e-52 PF16906: Ribosomal_L26" amino acids 6 to 113 (108 residues), 99.7 bits, see alignment E=1.1e-32 PF00467: KOW" amino acids 49 to 80 (32 residues), 30.5 bits, see alignment E=2.2e-11

Best Hits

Swiss-Prot: 100% identical to RL24_METMP: 50S ribosomal protein L24 (rpl24) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K02895, large subunit ribosomal protein L24 (inferred from 100% identity to mmp:MMP1410)

Predicted SEED Role

"LSU ribosomal protein L26e (L24p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LXE2 at UniProt or InterPro

Protein Sequence (119 amino acids)

>MMP_RS07255 50S ribosomal protein L24 (Methanococcus maripaludis S2)
MVLTNSKQPRKQRKALYNAPLHLRNSVMSAMLAKELKEKYAKNSLPVKKGDTVKVLRGNF
KGIEGEVSKVDYAGYKIIVEGVVNKKQDGNETAYPIHPSNVMITKLDESDEKRFKNSSN