Protein Info for MMP_RS06695 in Methanococcus maripaludis S2
Annotation: carbonic anhydrase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01673, carbonic anhydrase [EC: 4.2.1.1] (inferred from 99% identity to mmp:MMP1299)Predicted SEED Role
"Carbonic anhydrase (EC 4.2.1.1)" in subsystem Carboxysome or Cyanate hydrolysis (EC 4.2.1.1)
MetaCyc Pathways
- gluconeogenesis II (Methanobacterium thermoautotrophicum) (16/18 steps found)
- cyanate degradation (2/3 steps found)
- CO2 fixation into oxaloacetate (anaplerotic) (1/2 steps found)
- C4 photosynthetic carbon assimilation cycle, NAD-ME type (4/11 steps found)
- C4 photosynthetic carbon assimilation cycle, NADP-ME type (1/7 steps found)
- Methanobacterium thermoautotrophicum biosynthetic metabolism (35/56 steps found)
- 3-hydroxypropanoate cycle (3/13 steps found)
- glyoxylate assimilation (3/13 steps found)
- C4 photosynthetic carbon assimilation cycle, PEPCK type (3/14 steps found)
- 3-hydroxypropanoate/4-hydroxybutanate cycle (4/18 steps found)
- superpathway of the 3-hydroxypropanoate cycle (3/18 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.2.1.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (archaea)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q6LXQ0 at UniProt or InterPro
Protein Sequence (150 amino acids)
>MMP_RS06695 carbonic anhydrase (Methanococcus maripaludis S2) LGENAKPKKKLAIVTCMDTRLVNFLSEKLGIAQGDAKVIKNAGNIITEDVIRSLVVAVYL LGVEDIMIIGHTDCGMAAADFETVKKKMVERGANPNFTPDFEAWLGRMYCEETNVKEGVD LLRNHPAMPKDITIDGYVMDIETGDLVKIA