Protein Info for MMP_RS06360 in Methanococcus maripaludis S2

Annotation: UPF0280 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Swiss-Prot: 100% identical to Y1236_METMP: UPF0280 protein MMP1236 (MMP1236) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K09740, hypothetical protein (inferred from 100% identity to mmp:MMP1236)

Predicted SEED Role

"UPF0280 protein MA_1715"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LXW0 at UniProt or InterPro

Protein Sequence (247 amino acids)

>MMP_RS06360 UPF0280 family protein (Methanococcus maripaludis S2)
MKFFQEKISIKETNILLKVDNPKFFKMAKNTIINERLNLENYILRNPIFLTSYSPVEVPD
NAPEIIKLMAEAGFNADVGPMAAVAGTFSQLIIENLIENDCKNAISENGGDICLKCEMDT
TVGLYAGNSSLSGNLGFKLKKEKMKNGYGICTSSGTVGHSVSLGNADSITVFSKSAIIAD
AAATSIGNFAVGNAVDAINKCLEKAETISKIDGVFVCMGEHAGKIGKIPQLIKTDKKEVL
GNVFEMV