Protein Info for MMP_RS05625 in Methanococcus maripaludis S2

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 PF13439: Glyco_transf_4" amino acids 83 to 202 (120 residues), 52.2 bits, see alignment E=1.6e-17 PF13477: Glyco_trans_4_2" amino acids 108 to 181 (74 residues), 36.5 bits, see alignment E=1e-12 PF00534: Glycos_transf_1" amino acids 217 to 382 (166 residues), 122.8 bits, see alignment E=2.3e-39 PF13692: Glyco_trans_1_4" amino acids 227 to 355 (129 residues), 93.3 bits, see alignment E=3.5e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP1088)

Predicted SEED Role

"Glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LYA3 at UniProt or InterPro

Protein Sequence (400 amino acids)

>MMP_RS05625 glycosyltransferase (Methanococcus maripaludis S2)
MNELTEKTLLVLTPCYPDKRGKVVGDPFVKYPVDEMKRFFKEIIVISPQPYFPSLLTKFK
FFRNRFTASNVFQDYSYENVTVFYPKFFTLPMTPFRKRNGDYCYNASKRILKKNNLKFDL
IHAHFTWPCGYVAAKLKKEHKKKVVLTGHGFDIYELPFRNKFWNKKATDVLKKVDKIITV
SESNKKCIKVLGFNSIVLTNGFNSKKFKFLKNKKGLKSELNIPPNKKIILHVGNLIKIKN
QINIINAANELQKKRKDFVVYLIGAGPDKEKIINKIKKLKLEDHVKVLGPKTHDEIPLWM
NIADLFVLPSYSEGNPTVMFEALGCGLPFIGTNVGGVSEIITSEEYGLLYNDPEDYHILT
ELINRGLNKKWNNEKITNYSKEFTWKKISKRIINIYNDIS