Protein Info for MMP_RS05125 in Methanococcus maripaludis S2

Annotation: D-aminoacyl-tRNA deacylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF04414: tRNA_deacylase" amino acids 45 to 251 (207 residues), 219 bits, see alignment E=2.5e-69

Best Hits

Swiss-Prot: 100% identical to DTDA_METMP: D-aminoacyl-tRNA deacylase (dtdA) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K09716, hypothetical protein (inferred from 100% identity to mmp:MMP0990)

Predicted SEED Role

"UPF0204 protein MJ0166"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LYK1 at UniProt or InterPro

Protein Sequence (254 amino acids)

>MMP_RS05125 D-aminoacyl-tRNA deacylase (Methanococcus maripaludis S2)
MDYLLISSETDPASQNLKKHVENYGYSVFNIEKKSTQTNYSEFPQSEMYIFLSKHASESK
KPTLTVHTPGNLTDDNSHGGNPEEISPCNPVFNTLMLQNMNKYNEMEEYKELGFDVSFEV
LHHGPTDLKAPSAFVEIGSSEEQWQIDDAAEIITNSLIDTLNSIQNSEYDEKEKIIGIGG
GHYSPKFTKLALREEYYVGYLTPKHAKLSENILNQLTSKQEFDFIGIDWKGLYGEDKRKY
VEFFDENDISWQRV