Protein Info for MMP_RS04665 in Methanococcus maripaludis S2

Annotation: SBBP repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06739: SBBP" amino acids 127 to 145 (19 residues), 21.1 bits, see alignment (E = 3.8e-08) amino acids 278 to 298 (21 residues), 20.6 bits, see alignment (E = 5.4e-08) PF19077: Big_13" amino acids 711 to 774 (64 residues), 31.5 bits, see alignment 3.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0898)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LYT9 at UniProt or InterPro

Protein Sequence (1026 amino acids)

>MMP_RS04665 SBBP repeat-containing protein (Methanococcus maripaludis S2)
LKIRHFIITSFIFLLCASFVNAEEAVWNDTFDYGDGRDIAVDEDGNSYVTGGKYDIVTIK
YAPNGTRLWNSTLDFGATSEVGYSIALDNGGNAYVTGRGNDNFVTIKYAPNGTILWNTSL
HMGHYEYPESIAVDLDGNSYVTGYMNNDTTNNRNLVIVKYAPNGTILWNSAFSYNSNDCL
GMVIALDDSGNAYVTGSAYISFGRSTILTTKYAPNGTMEWYKLFDGGSSLGSGCGLALDD
SGNAYVTGFRTGTDYDMVTAKYAPNGTLLWSSTLNQLGNDIGYGLALDDSGNAYVTGYVT
NGTENMITLKYAPNGTILWNNTIDYGSDRDYGFDVVLDNGGNAYFTGYVTDESRGQNIIA
MKYAPNGTNLWNSTYCPGINSWGNAIEVDNSGNAYVTGSMSGYAIVTVKFGIPVDETAPE
VTINTLEKSYNTTSIVINVTATDLNLDSVIAEINGTENITLENISGNFVNSTYEFSEGLN
TLKIYANDTSGNVNSSENISFIVDVTNPELRIETSNVSNTSELTINVTATDNIELNYTNF
SIVDNFGNLVNSTVNETNGSYQITLSVPADGIYNVTATAFDMVGNTNTTEAINVTVDENA
PLVTINTLEKSYNTTSIVINVTATDLNLDSVIAEINGTENITLENISGYFVNSTYEFSEG
SNTVKIYANDSFGHINSNENITFRVDLNSPEITINLIEGEYLNNGSNVINFTVNESNLDK
VTAFNGSTEIALENSTGNYLNSVALNEGVYNVTIRINDTAGNIAEKSLNFIIDTTAPVLT
LNNPVNGTTFTTSSVSLNVSANDSLSNVSSVTAKIGSVRNVTLFFDGNYYTGNTGTLSNG
NYEIRIIATDLVGNVNSNETVNITIKVPASTSSGSSGSHYSSDLSDGITSSVIKNTVSNS
NIVYGSEIDGKYAGKLKENLYNSEDYEISGDTIIVGGPKYNVLANKYDSKFGISISNDYP
GENNGIIQVLKVQDNTGNIIKSYKIVYIAGSDRLGTQAALEYFKTLNELPEGPIMVEWTE
NGPVLA