Protein Info for MMP_RS04175 in Methanococcus maripaludis S2

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 59 to 83 (25 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 122 to 144 (23 residues), see Phobius details amino acids 182 to 200 (19 residues), see Phobius details amino acids 215 to 242 (28 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 278 to 299 (22 residues), see Phobius details PF03773: ArsP_1" amino acids 26 to 297 (272 residues), 130.5 bits, see alignment E=3.7e-42

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 100% identity to mmp:MMP0801)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZ28 at UniProt or InterPro

Protein Sequence (300 amino acids)

>MMP_RS04175 permease (Methanococcus maripaludis S2)
MIEILHREFIYLWYYFTVQFNQIAIYWVFGIVFGSIISVFGKNKIHKLFASIQNRRLGVF
GMIPAGLLGIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNPQLIIYSAALGET
ALAVRIISALACGVIAGLLVKFLFNDRKFFNFSGFSEPTSRDNDPNVLLRLLKNIWRNIK
ATGHYFLIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMA
WLDSGMSMGAAAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIISAIIAGVVVNLMV