Protein Info for MMP_RS03510 in Methanococcus maripaludis S2

Annotation: 30S ribosomal protein S3ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 PF01015: Ribosomal_S3Ae" amino acids 11 to 198 (188 residues), 230.7 bits, see alignment E=5.5e-73

Best Hits

Swiss-Prot: 100% identical to RS3A_METMP: 30S ribosomal protein S3Ae (rps3ae) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K02984, small subunit ribosomal protein S3Ae (inferred from 100% identity to mmp:MMP0669)

Predicted SEED Role

"SSU ribosomal protein S3Ae" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZG0 at UniProt or InterPro

Protein Sequence (225 amino acids)

>MMP_RS03510 30S ribosomal protein S3ae (Methanococcus maripaludis S2)
MARMKARSAKGKRVAKDTWKSKVWYDIYTPQSFGGDVIGQTPANDPANLIGRISEISLRD
LTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDG
FKVRVKALVLTAVRARDHHKTEIRVRMEQIIKEMAKETPFAEFVHAMLMGGLGSKIYGDC
KKMFPLKRVEIFKSEVIEFGKAAEAPVEEAAAEEVVEEAAAETQE