Protein Info for MMP_RS03375 in Methanococcus maripaludis S2

Annotation: methanogenesis marker 12 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 TIGR03281: putative methanogenesis marker protein 12" amino acids 3 to 325 (323 residues), 515.2 bits, see alignment E=3.5e-159

Best Hits

Swiss-Prot: 100% identical to Y642_METMP: UPF0285 protein MMP0642 (MMP0642) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0642)

Predicted SEED Role

"M. jannaschii predicted coding region MJ1370"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZI6 at UniProt or InterPro

Protein Sequence (325 amino acids)

>MMP_RS03375 methanogenesis marker 12 protein (Methanococcus maripaludis S2)
MIVVGIDHGTSGITACVMENKTVKSVFKMKRTEINEKSFLKELEKQVNLNDIDLIGVCYS
MGDGIDKITDIKRVENRGVINLEGIGKKIGGGTKVYDEIKSSNIPAIVIPGLHNGVKSMD
KRFNALFSHIASPEKISICYNAYKTFGFENFILSDISSNTVTLLIKDGKIFGGFDACVGA
VGILHGPIDLELIRNIDADKITANEAFSKAGVVKVTDSYKGVEDTKFEIMNNYDKDEKCK
LAVDSLVLSVSMEINSLMFLTPDKNVILAGSIGTWENPNVSKMIKENIDGNVLVLNRESG
AIGSAMIAEDILNGKKEILGIPVDF