Protein Info for MMP_RS03370 in Methanococcus maripaludis S2

Annotation: 50S ribosomal protein L7Ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 TIGR03677: ribosomal protein eL8" amino acids 4 to 116 (113 residues), 158.5 bits, see alignment E=2.9e-51 PF01248: Ribosomal_L7Ae" amino acids 17 to 105 (89 residues), 88.8 bits, see alignment E=7.8e-30

Best Hits

Swiss-Prot: 100% identical to RL7A_METMP: 50S ribosomal protein L7Ae (rpl7ae) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K02936, large subunit ribosomal protein L7Ae (inferred from 99% identity to mmq:MmarC5_0963)

Predicted SEED Role

"LSU ribosomal protein L7Ae" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P62426 at UniProt or InterPro

Protein Sequence (117 amino acids)

>MMP_RS03370 50S ribosomal protein L7Ae (Methanococcus maripaludis S2)
MAVYVKFEISQELEEKTAEVVANAEKIKKGANEVTKAVEKGIAKLVVIAQDVQPEEIVAH
IPVICDEKGIAYSYSSTKEALGKAAGLEVPTSAIAVVAEGSADELKDLVEKLNGLKA