Protein Info for MMP_RS01345 in Methanococcus maripaludis S2

Annotation: rRNA maturation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Swiss-Prot: 100% identical to BRIX_METMP: Probable Brix domain-containing ribosomal biogenesis protein (MMP0247) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K07564, probable brix-domain ribosomal biogenesis protein (inferred from 100% identity to mmp:MMP0247)

Predicted SEED Role

"Probable brix domain-containing ribosomal biogenesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6M0M3 at UniProt or InterPro

Protein Sequence (164 amino acids)

>MMP_RS01345 rRNA maturation protein (Methanococcus maripaludis S2)
MIITTSRKPSQRTRSLVNDLARVFNFKILNRGKIPLSELIENKDDMIIVEELKGNPGRLK
IFNFENNKILSMNLSLKLQREVSGKAFKNSGKLGSKFDKNTEHLKEFFFEYLFKKLSNYK
EENFEVVITFKTVDESTFYIEVHKGSENMGPSLKIKTVKILDIE