Protein Info for MMJJ_RS09045 in Methanococcus maripaludis JJ

Annotation: EMC3/TMCO1 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 164 to 189 (26 residues), see Phobius details PF01956: EMC3_TMCO1" amino acids 24 to 197 (174 residues), 85.4 bits, see alignment E=2.1e-28

Best Hits

Swiss-Prot: 62% identical to Y480_METJA: Uncharacterized protein MJ0480 (MJ0480) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: None (inferred from 100% identity to mmp:MMP1030)

Predicted SEED Role

"Uncharacterized protein MJ0480"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (198 amino acids)

>MMJJ_RS09045 EMC3/TMCO1 family protein (Methanococcus maripaludis JJ)
MFESIYSAFYNALDAIFLPMVQTMDPAIFIFVTALLVSFIINLATKVLVNQDRMAELKNE
LQEFQVKAKKASKDPELMAELQKEQQKMMTMQMEMMKMSFKPMIYTWVPIIIIFAYLRHV
YDFGGIYHTMQPAWDGAIVQLPVIISKIIFIGIWHWIGGIFYHGGFGVVSSTVLGWLGWY
IMCSMGTSMVLRKLMGIK