Protein Info for MMJJ_RS04295 in Methanococcus maripaludis JJ

Annotation: DUF2202 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF09968: DUF2202" amino acids 65 to 226 (162 residues), 266.8 bits, see alignment E=3.2e-84

Best Hits

KEGG orthology group: None (inferred from 94% identity to mmp:MMP0194)

Predicted SEED Role

"Uncharacterized protein MJ0754"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (272 amino acids)

>MMJJ_RS04295 DUF2202 domain-containing protein (Methanococcus maripaludis JJ)
MSNKKIITSFLLLLVILSSISAYGNQNKSYGQNQGGQVYQLYDDTQVNHQQEIGNYPVEE
LSQEEIDGLLLMREEEKLARDVYLELYDIWGQQIFLNIANSESTHTNAVKLLLDKYNLTD
PVTNDTRGAFTNQDLAELYSTLVEKGSVSLLDALTVGATIEDLDINDLKKLNEISDNQDI
TAVYNNLEKGSKNHLRSFTRVIEQNGGIYEPQYISESEYNEIISSEMETGTGYSTNPTAQ
TGQSNQYSASSSNNESKNVFEWMWQGLMNWFR