Protein Info for MMJJ_RS03365 in Methanococcus maripaludis JJ

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 154 to 172 (19 residues), see Phobius details amino acids 192 to 209 (18 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (493 amino acids)

>MMJJ_RS03365 hypothetical protein (Methanococcus maripaludis JJ)
MKHMPNKIIILLLIICCIPFVNAENIEPADPLTAEYMTKGSLTSFSDMVIDSYYYNKTSK
TLIFEITNSGNPKWVSVYDGYKYKYTRGASGFSEVRIDTGTHKYNFTNPYTSYGYINYIF
LYDNKFCQIEDVLQSGNLPDELLYATKGAISKMGWDRAILSIILFVLVMFHVKNKYIEKN
LLIRFKQSILPITRLNVGLALLFLFYKYGFPFEATAWKDFIVFNSKSLTIPWLKFAWDFK
YIWSYYNFYLFLIPYLASRVAYYVHTKKLLTYIRIDFANKTVYDISVPYEQDGEKKRVLW
HDKTYKHIEYDEVDEWNFVSTLKDYKGKCKIITDYQVIDYLEESEQALKQSKSIGETVYN
LFRWVKTLFMGKVGKVTGEIWINKSCIMDKTTAECVFLSDNLGKITESVKKWAGMYYEKA
GLMGVEAQELMALAMEQVLRDVYPLAMRNIKDLLKKTEEQNKSMDVKIDDESRDGPGNEE
TNQSDSGSGESNT