Protein Info for MMJJ_RS03050 in Methanococcus maripaludis JJ

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 54 to 80 (27 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (426 amino acids)

>MMJJ_RS03050 hypothetical protein (Methanococcus maripaludis JJ)
MGKFKDYLKKNDEKIFSILEKILSFRFTLKFLLLPFILTVILNYFEIIPKDIVFYIYWGL
LAVLGFYFSIFLIYFTLIAIMPKHLFNQDVSEGDVVLLIISIIVLISVMKVFAPNTITTQ
FIDYFIDGASGIGTFLVAIIAVLGLKQGKNQLIELEKQRKAQYKPELLAKDRLNIYFHNF
EKVIEKYPAFNNSFVKDHLGVWSTSYKEPEYYEKMISEFLSKVKKNNNVADPFELEKVEI
NIEDEVYVEVYNIGKGFAKNIEYTWEIEHSKLFENFYKKYENDPLIYKIENEFDHSYYFG
GTPDISLASNNKIRIDTYNLVTPYESSKEVLKIPLPWNLLKIMGLCSKKGGFSDLTTFPL
KLHLNYQDIDGNPYPKTYEMRAYRIEPGRYSHYPKLLFTDNNDFMAYEFRIYEIKEETKE
TTETAK