Protein Info for MMJJ_RS02730 in Methanococcus maripaludis JJ

Annotation: endonuclease/exonuclease/phosphatase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 PF03372: Exo_endo_phos" amino acids 5 to 167 (163 residues), 36.6 bits, see alignment E=2.2e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (223 amino acids)

>MMJJ_RS02730 endonuclease/exonuclease/phosphatase family protein (Methanococcus maripaludis JJ)
MVRVITWNMQGACHSTEGKWRVDIPILMDMADICCLQECGTLPSTAILHTDYICDYEDFK
LYTWNLGTWDRPNIYYILHYYWDAGANRCNLAIITKEKPKKAHIVTNGTWYEGRPSIGIL
YNGMNYFTIHASAGSRGGDAAKMLDDIDGFIDPGENWFAAGDFNREPYDLIISYTKCPAN
GNTHPAIHPEKMLDYGVLKEGDSVTGTVVSDYRSDHYPVLFEL