Protein Info for MMJJ_RS01050 in Methanococcus maripaludis JJ

Annotation: COG1361 S-layer family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 385 to 406 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 44% identity to mmp:MMP0522)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>MMJJ_RS01050 COG1361 S-layer family protein (Methanococcus maripaludis JJ)
MSFKKIIISSITLLMLLSVAMAPVYAETSISDISLVSINLVNQDPTPAVGGDIFEVRIGV
KNEGGKSAGDYILELDPSYPFQKVAGEELSKEIGFLDKYQDDDKEIIITAFKLRVNEEVT
SGNYPLKVLLYKKGDLTKTGYKTELTVDVGNKENAEVMLSTSELNPGENSKLTFTIKNAG
SAPLKDLTFSWDTPENKILPLGSGNTRFVKYIGVNQAVNLDYDVMAGSDIEPGLYKINMY
LNYEDTINSSEKNIIQDAGIHILEKADFEIAFSENLDDSYTFSIMNVGNSDTKSVSMYIP
KQDGWTIIGSNNAIIGNLDAGDYTYASFNLLADSSNQSEIPIKVEAYYTSNEGNRKVVEK
EILVSNSNAALTYINQADSGKGGFTGYLIMAGIVIIAILILGIFIIRKILKKIKSAKKE