Protein Info for LRK55_RS15660 in Rhodanobacter denitrificans MT42

Annotation: cation transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details PF01545: Cation_efflux" amino acids 16 to 184 (169 residues), 46 bits, see alignment E=2.6e-16

Best Hits

KEGG orthology group: None (inferred from 71% identity to mes:Meso_4140)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcD" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>LRK55_RS15660 cation transporter (Rhodanobacter denitrificans MT42)
MPANAADRSLRRVVGIVALLNLGYFGVEFAVALAIGSVSLFADSVDFLEDASVNLLILIA
LGWSLKARARVGMGLAAILLVPALATLWALWSKFQLPAPPAPLPLTATGLGAMLVNFSCA
MLLVRFRHHSGSLTRAAFLSARNDVLANIAIIIAGAATAMTHAAWPDMVVGAGIMLMNAD
AAREIWQAARSEHRAATGPHA