Protein Info for LRK55_RS15630 in Rhodanobacter denitrificans MT42

Annotation: ion channel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 79 to 95 (17 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details PF07885: Ion_trans_2" amino acids 147 to 228 (82 residues), 29.9 bits, see alignment E=2.1e-11

Best Hits

KEGG orthology group: None (inferred from 57% identity to avn:Avin_22810)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (237 amino acids)

>LRK55_RS15630 ion channel (Rhodanobacter denitrificans MT42)
MNDIDARASAGGMPRFTRLRWLVRIIRHPSAILLLVQLSGLLLYPFIEHTRPARALFGAF
GVLVLGLAISMVRRTRGRAWISAGIALPAVLLNVLDLTLDMPPLRPWWAALEAVFYFYAA
GCLIAYMLGDRRATTDELFAAGATFTLLVWAFTYVFVLCQTLQPGCFAAAVNPQAPRSWT
ELLFLSFALLSSTGIGDVIPITVHARAAASLEMFAGVMYIALVVSRLIGLTLLRRGE