Protein Info for LRK55_RS15330 in Rhodanobacter denitrificans MT42

Annotation: IS1182 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 PF05598: DUF772" amino acids 53 to 122 (70 residues), 51.4 bits, see alignment E=1.4e-17 PF01609: DDE_Tnp_1" amino acids 244 to 494 (251 residues), 32.2 bits, see alignment E=1.4e-11 PF13751: DDE_Tnp_1_6" amino acids 370 to 497 (128 residues), 91.3 bits, see alignment E=8.9e-30

Best Hits

KEGG orthology group: None (inferred from 56% identity to neu:NE1093)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>LRK55_RS15330 IS1182 family transposase (Rhodanobacter denitrificans MT42)
MARYRHIDMSPRLLPVDLQAQLVPGSFAHAVHHLVDQLDLSAFDAHYRNDDSGAPAHAPT
MLLKAVLLAYSQGMVSSRSIERACRDNVLFIALTGDAKPHFTTIADFVSRSRGAIATVFA
QVLTLLDGEGLIGRQMFAIDGVKLPSNASKHRSGTRAEFLAQAQKMERAATTMLECHQAN
DAGAAEDVRDAKAAERIERLTREATKIRQWLADHPQDRPGSRGKVRKSNRTDNASAKLAT
DKGVIQGYCGVAVVDARHQVIVEASAHGTGAEQELLLPVLDACAEQRTASTLITADAGYH
SEANLAALADQGIDALIADHAMRRRDERFAGQDKHLAKPDPLHDKSRTPGKPRLFGSEDF
IIAPDRSHVICPAGKRLHRNGKDCTIGGYAAIKFRAPDGACKDCPLRAKCLRKPETTRSR
QVAVLTRKAEPTHSQRMRERIDSAWGREQYGRRFATVEPVFGNVRANKRLNRFTLRGQAK
VDGQWKLFALVHNIEKWANYRKAA