Protein Info for LRK55_RS13315 in Rhodanobacter denitrificans MT42

Annotation: P-loop NTPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 PF10609: ParA" amino acids 44 to 95 (52 residues), 47.8 bits, see alignment 4.5e-16 PF13614: AAA_31" amino acids 44 to 191 (148 residues), 47.2 bits, see alignment E=9e-16 PF09140: MipZ" amino acids 45 to 228 (184 residues), 35.2 bits, see alignment E=3e-12 PF06564: CBP_BcsQ" amino acids 45 to 186 (142 residues), 23.2 bits, see alignment E=1.6e-08 PF00142: Fer4_NifH" amino acids 46 to 282 (237 residues), 28.9 bits, see alignment E=2.9e-10 PF01656: CbiA" amino acids 46 to 241 (196 residues), 59.1 bits, see alignment E=1.5e-19 PF02374: ArsA_ATPase" amino acids 48 to 81 (34 residues), 23 bits, see alignment 1.5e-08

Best Hits

KEGG orthology group: K04562, flagellar biosynthesis protein FlhG (inferred from 55% identity to tgr:Tgr7_1337)

Predicted SEED Role

"Flagellar synthesis regulator FleN" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (312 amino acids)

>LRK55_RS13315 P-loop NTPase (Rhodanobacter denitrificans MT42)
MDQASGLTQMLSAMTRRPAAEAPPAHHQASSLLAAVPAARRHCRTIAVAGGKGGVGKSTV
AVNLGMALSVAGRDVVLLDADMGLANVDVMLGLAPSRHIGHLLDGECTLDELMLSAPRGL
RVVPAGSGARRLAQLSSGEHAAIIRAFDELAQPPEYLLVDTAAGLSDNVTMFAAAAAEVI
VVVCDEPASLTDAYGLTKVLSRDFGVRRIRMVANMVRNEGDARALHQKLARVSDRFLDVV
IEFGGWVPHDERLRQAIRRQCAVVDLWPSSHAALAFKQLAGAADKWVEPERAGLDRIAFF
AGRTTPVGGVPR