Protein Info for LRK55_RS12875 in Rhodanobacter denitrificans MT42

Annotation: TIGR03088 family PEP-CTERM/XrtA system glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 TIGR03088: sugar transferase, PEP-CTERM/EpsH1 system associated" amino acids 4 to 377 (374 residues), 437.5 bits, see alignment E=2e-135 PF13579: Glyco_trans_4_4" amino acids 17 to 170 (154 residues), 67.3 bits, see alignment E=6.2e-22 PF13439: Glyco_transf_4" amino acids 17 to 173 (157 residues), 80.6 bits, see alignment E=4.3e-26 PF20706: GT4-conflict" amino acids 187 to 317 (131 residues), 27.4 bits, see alignment E=5e-10 PF00534: Glycos_transf_1" amino acids 197 to 352 (156 residues), 134 bits, see alignment E=1.2e-42 PF13692: Glyco_trans_1_4" amino acids 199 to 341 (143 residues), 120.8 bits, see alignment E=1.7e-38 PF13524: Glyco_trans_1_2" amino acids 287 to 365 (79 residues), 41.4 bits, see alignment E=4e-14

Best Hits

KEGG orthology group: None (inferred from 46% identity to nhl:Nhal_3237)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>LRK55_RS12875 TIGR03088 family PEP-CTERM/XrtA system glycosyltransferase (Rhodanobacter denitrificans MT42)
MNERPLIVHVLYRLDTGGMEHMLVTLINQTCQRYRHAVICLEGYGALRDQIESGDVVCVA
LGKRSGKDWRCYFRLWRALRDLGPDLVHTYNIGAVDVAPVARLAGVRRVVHAERGRDAAD
PRGESRKYRLLRRGLLPFIDRYLAVSRDLQDWLMEKVGIPSSRVACIPNGIDVTAFAGTA
HEKSTRRLLGAFAPPGTVLIGTVGRLDAVKDHAGLIAAFRILCEAWPHQREQLRLVLLGE
GPQRAALESQIERGGLSTQVRLLGNRSDVAALLAEFDVFALSSIAEGMPGVLLEAMASGL
PVVATDVGGVSEVVVAGVTGTLVPAGDPHALAAALRAYVADEKLRRRHGEAGCERVAARF
GLRSMVSAYVALYDELLGRPTNAVQPRMMSGLTGHKEH