Protein Info for LRK55_RS11230 in Rhodanobacter denitrificans MT42

Annotation: DUF819 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 35 to 56 (22 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 266 to 286 (21 residues), see Phobius details amino acids 296 to 318 (23 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 356 to 382 (27 residues), see Phobius details PF05684: DUF819" amino acids 14 to 381 (368 residues), 253.6 bits, see alignment E=1.7e-79

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>LRK55_RS11230 DUF819 family protein (Rhodanobacter denitrificans MT42)
MHVIHTVWPYLALMLLIAGLFPAMERRFGWKLFSVLPPIVLTYLLVTALAVSGLWQVNAE
IKAAQSMLVSHMVPALLFLLMINCDLRAIWRLGPRVLGVFACTSLSLFVAFIGTYLIYRH
WLPGNDWQPLAALSGSWVGGTANMIAVKQAIGMSDTYLAMSLLTDALGYSMWVVVLFSVA
RLAPAFNRWTRAKSSGDTPLAPVKAKAPTTYDSVLLWLGMALAVAALSGWLANWLPVSGM
ISATTWAILLATGFGLVVAHTPLAEFPGASTISSAMLISVVAVLASQSNFQGIAAAPLYL
LCGVTIIAIHAVLLIGCAKLFRFDLYLCGISSLAHIGGVAATPILAASYSAALVPVGILL
ALLGYILGTGFGLLVATILSTLAGG