Protein Info for LRK55_RS11010 in Rhodanobacter denitrificans MT42

Annotation: M1 family aminopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 transmembrane" amino acids 18 to 41 (24 residues), see Phobius details amino acids 55 to 80 (26 residues), see Phobius details amino acids 107 to 133 (27 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 323 to 346 (24 residues), see Phobius details amino acids 367 to 384 (18 residues), see Phobius details amino acids 410 to 431 (22 residues), see Phobius details amino acids 444 to 466 (23 residues), see Phobius details amino acids 474 to 495 (22 residues), see Phobius details amino acids 528 to 547 (20 residues), see Phobius details amino acids 568 to 589 (22 residues), see Phobius details PF01433: Peptidase_M1" amino acids 875 to 1072 (198 residues), 49.4 bits, see alignment E=2.2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1200 amino acids)

>LRK55_RS11010 M1 family aminopeptidase (Rhodanobacter denitrificans MT42)
MFFEILRFELRQQLKAPLFWIVAAVFGALAFALASTDAVIVGGASGNVLRNAPLVIARLL
GVLTVLSIFLVTVFVAGAALRDFDNRTAELFFTTPLSRGAYLGGRFAAGYLAALAVMLAC
ALGVAVGGLMPWIDATRLGPASWHGYAWAFGVMVVPDLLFIAALLFLLATTTRSLLATYI
GLIVYFVLNSVVGLLTRDVNNHFIAAMLDPFGGRTLALVTRYWSADQANLELPALTGVLL
FNRVLWSAVGAVMLGAAVALFRPNREGLRLPRRRKRAEPPLLRPQAGAATLALPKVRLAD
DLRAHLLQLRTQFVFDALGVLRGVPFLIMLALGLFNLIFALALSSQIYGTATWPVTHQVL
ENVRGGFQWLLYIIVTFYAGELVWRERSQRSAEVSDAFPVPDWVPLTAKLGALLAVIASF
LLIGAIVGLGWQLGHGYTHLEPGLYLATLALNALPFVLLAVLALFLQVLSNNKFLGYLLT
IVWLVLSTIGFDLLHWEQNLYNYGNAPGLPYSDMNGFGHFLRAVLWFDFYWACAAVALLV
LAALFWVRGTEPSWRERLREARARLHAPAKLALAAALFAFVGSGAWIYYNTNVLNHYQSS
TTKTIQHADYEKKYAKYKNLPQPRITAVKADVDIFPYRRRLEIRGHYTLVNKHTAPISEL
HVNFNDKFAVKSLDFAPHDTVSADKELGYTIYRLKTPLAPGASMAFDFNLAYAPKGFANR
PEGEFLVHNGTFFNNSVMPQFGYQTQTQLTDRNDRRKYGLSAEVPRMPKLGDEKARANTY
ISNDADWISFDTTVSTAPDQIAIAPGTLQKEWTANGRRYFHYTMTQDGMEQPMLPFFSYL
SARYAVKHETWKGVDIAVYYNPVHAWNVDRMIQGAKDALDYYDANFTPYQFKQLRILEFP
NYASFAQSFANTIPYSESIGFIADLRDKTKIDYVYYVTAHEVAHQWWAHRVIGANMQGST
MLSESLAQYSALMVMKQKYGADQMHKFLKYELDGYLAGRATEKLAEEPLAKVENQQYIHY
KKGSLVFYALQDYVGEGTLNAVLKQFLLDKGFQQPPYTTSQEFMDALGKALDPKWQPLLD
DFFWKITLFDNRLTDATAKKLPNGKYEVTLQVHAGKVHVDGTGKETAAKPDIPIEVGVFA
ASKGDGMDGKPLYLEKRLLPDGDSTVTVIVDGKPALAGIDPYNELIDRVSSDNRRPVTLQ