Protein Info for LRK55_RS10165 in Rhodanobacter denitrificans MT42

Annotation: glutathione S-transferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 PF13417: GST_N_3" amino acids 10 to 80 (71 residues), 67.1 bits, see alignment E=2.9e-22 PF02798: GST_N" amino acids 13 to 74 (62 residues), 41.9 bits, see alignment E=2.1e-14 PF13409: GST_N_2" amino acids 13 to 76 (64 residues), 60.7 bits, see alignment E=3.3e-20

Best Hits

KEGG orthology group: None (inferred from 55% identity to pap:PSPA7_0579)

Predicted SEED Role

"Glutathione S-transferase family protein" in subsystem Glutathione: Non-redox reactions

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (250 amino acids)

>LRK55_RS10165 glutathione S-transferase family protein (Rhodanobacter denitrificans MT42)
MSQRLRVIGNYISPYVRKVLVCLELKGLEYEVDPIAPFVGNDEFTRLSPLRRIPVLIDGG
LELSDSSVICQYLEDRQPSPSLYPRDIADRARARWLEEYADTRLADGLIWRLFHQLAIKR
HVFGEAPNEAVVQHAREVEIPAALDYLERQLPDDGFVFGALSIADIGIASFFRTASFVRY
TIDAERWPLAAALVAQVQALPVFQKLAGFEDCMLRLPLAEQRGALLTAGAPLTSDTLGTS
APRPGPPRAS