Protein Info for LRK55_RS06085 in Rhodanobacter denitrificans MT42

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 230 to 254 (25 residues), see Phobius details amino acids 261 to 278 (18 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 324 to 343 (20 residues), see Phobius details amino acids 349 to 366 (18 residues), see Phobius details amino acids 373 to 392 (20 residues), see Phobius details amino acids 412 to 431 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>LRK55_RS06085 hypothetical protein (Rhodanobacter denitrificans MT42)
MMPESTPPTGPLIDATQRKLIGGIVIMTLLIAALMIAGLAIGGRPDPAPLRAASTLLDGP
WRFHTGDDPRWAAANLDASGWETIDLTAPPGSHDGDVGLPDYVGGWSAHGHRGYHGYAWY
RRTVTVPAGSASWDILGPTLVEDGYELYWNGQRLGGSGRLGPEPRLVGTRPLRFALPAGA
AGTSGVLTVRTYMLPRPGPSADGGGMHAAPILAPRPVGEALHRAQWQRTIAGYVVDAVEP
AAMLALIALAFVVGPRSRRKGFLLFAGIALALTAARRLDNAIVSWTDLQDLRTYAWLAKV
MWAPTMTAWLLAWNRWHPPVWRSIDALAIALGAAGIVGALAHLPTWASISRLGSLALFAV
IVVRIVRGGPLRTLALVTLASVLAALFGGELLDPLGVPGIWFPFNIGVSRTQYIYAIGIP
LLAVLIARTLLPKDATASKAGWWQSSTRPEHDESRNQTI