Protein Info for LRK55_RS05765 in Rhodanobacter denitrificans MT42

Annotation: putative baseplate assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1037 TIGR02243: putative baseplate assembly protein" amino acids 622 to 960 (339 residues), 186 bits, see alignment E=6.2e-59 PF04865: Baseplate_J" amino acids 767 to 942 (176 residues), 29 bits, see alignment E=3.4e-11

Best Hits

Predicted SEED Role

"FIG00500935: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1037 amino acids)

>LRK55_RS05765 putative baseplate assembly protein (Rhodanobacter denitrificans MT42)
MSCCSACGKHACACGCGATAGTPLPLTNRPGLDSLAYRVGTYADFRATMQAGLSDAALPA
LAGLRTREADDPAMALIDAWAVGADVLSFYTERIANEAYLRTATERRSVLELARLVDYRL
RPGVAASVYLAYTVEKDSPPVTIPAGARAQSVPAPGEQMQTFETAEPLDARFEWNALQPR
LTRPQNITLDNVAGLGELWIAGTASNLKPNDRLLFLFGDLASGVQAIRLVQSVEVQQQSG
RSKVLLQPVDAATVAIVAAASKAIAALNASAAGPHRERWLEGIESARRDLLLGGDNGGSF
DVLMSRRLDGIPAGPPAVDDFKSAVDAAFGTVPAPAGPPAGFGALFGALTLTPTLQPASR
FRLQRNVASALGKASDVRPQLLLNFEARLADNFYRAWTSVPQGEPSPALSGVHALRVSAP
LFGYNAPHIMGLGLNTDAGTKATVPYVSRPDGDWTAAEDDDRVQLDNAYDGVLAGSYLLI
QPSSDDVPAVAKVKSVRIHPRSDYGISGKTTDIVLDDPSTGGGSPVWRAPDMAMLRGTQA
HAQSEPLPLAELAIADTIGRVADDGTPRTTGDNATRLTLDTAVDGLKVGRWVIVEGRRSD
VPGTDAVTAAELVMLAAVEQGADANLPGDTVHSTLVFASQGLAYSYVRDSVAVHANVVRA
SHGETRNEVLGSGNGAATMQAFVLKQSPLTYVSAATVDGVQSTLTLRVNDMRWHETRNLA
FVGAAERSFVTAIDDGGKTTVQFGDGTHGARPPTGIENIVATYRNGIGTPGNVRARQVSL
LATRPLGVKEVINPLRASGGADAETRDQARRNVPLAVLALDRLVSVPDYADFARTFGGVG
KAAAIKLGHRVQVTIAGAADAPIDSSSDLYRNLLQALQRYGDPSLSVQLGVRELLALTVS
AKVGLLPDFAWESVEPAVRAALLDAFGFERRALAQSVYLSELVACVQAVRGVAWVDVDAF
GSLDEATLLAGFGVSGDKQGDGVGLMSHATTTTVATVPPRVRVLPARYDDQGTLRPAQLA
YLPPNIPDTLLLQEATP