Protein Info for LRK55_RS04215 in Rhodanobacter denitrificans MT42

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 19 to 41 (23 residues), see Phobius details amino acids 309 to 333 (25 residues), see Phobius details amino acids 364 to 387 (24 residues), see Phobius details amino acids 399 to 422 (24 residues), see Phobius details PF12704: MacB_PCD" amino acids 20 to 217 (198 residues), 62.3 bits, see alignment E=8e-21 PF02687: FtsX" amino acids 313 to 429 (117 residues), 61 bits, see alignment E=1.1e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>LRK55_RS04215 ABC transporter permease (Rhodanobacter denitrificans MT42)
MLAYYFQLGLLSLRRNPALTALMVMAIGFGVAASMITWSVFRAVSGNPIPGKSAQLFTPQ
VDGWGPQQNLDGEPAEALAYTDAIALMQAHQAKRQTLLYPVQLSVMPGGQRDLPLNVNGY
AVTADFFSMFEVPFRYGSGWSVRDDDARASDVVISSELNQKLFGGADSVGRTLGLGGHDY
RIVGVASHWNPRPRFYDLFSTSGFADEPGIYMVFSRALDLHMYTNGRNSCRGQLSFTNWT
DYTQSNCVWITPWVELDSPAEVASYRSFLANHAADQQRAGRFNWAANVRLRDVMQWLDQE
HVVPPESRIALAVALGFFLICLVNTIGLLLAKFMRRAGEIGVRRALGATRGEIYAQYLVE
AGTVGLAGGVLGLLLTALGVSGVGILFQPEIARLARLDVSLVGLTFVVAILATVLAAFYP
AWRAAHVQPAWQLKSS