Protein Info for LRK55_RS03835 in Rhodanobacter denitrificans MT42

Annotation: M56 family metallopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 68 to 90 (23 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details PF05569: Peptidase_M56" amino acids 18 to 276 (259 residues), 177.6 bits, see alignment E=1.7e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>LRK55_RS03835 M56 family metallopeptidase (Rhodanobacter denitrificans MT42)
MSSVELTGTDWLGRGWLLILAFTAAALLAAALRRPCRRLFGAERAFQLWLLPPLALLASQ
LPHATAAPAVMLSPVVVAITSAATALPVYAAGPSATDWRVWTMLLWLLGSMASLLQAVLA
QARYRMRLRGATSVVDAQSRWPVLRAPGADVGPALIGAWHARIVLPADFEQRYDAGERAL
ILAHETAHARRGDGWWCLLARVLAALFWFHPLAWWALAALRHDQELACDAAVLREHGAQR
RSYANAMLKTQSAAFALPVGCTWSPRHPLTERIAMLKLPSPNRWRRNTGMIAGIAVAIVV
AGSVYAASAPQGERPAWKVQADHATWKVRGQEYQLDMQVELSTDAGHERHAENVALALCM
APGKAAMASVGTLRVEATTVPAGDRQVRIDLAVGNTGESPLAHSQLLGVLGHKLRAAGTR
GDGKHAYVIDVTPQAGCPARAVAEASPVKVTGHVTNSTARAVAESIAAKAGWTLANPEAL
GHAPVTLSFNDMPAGTAMQRVADLAGMKLVLDGERVRFTPR