Protein Info for LRK55_RS02090 in Rhodanobacter denitrificans MT42

Annotation: FUSC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 transmembrane" amino acids 36 to 47 (12 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 102 to 119 (18 residues), see Phobius details amino acids 126 to 142 (17 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 371 to 388 (18 residues), see Phobius details amino acids 410 to 434 (25 residues), see Phobius details amino acids 441 to 458 (18 residues), see Phobius details amino acids 463 to 482 (20 residues), see Phobius details amino acids 491 to 511 (21 residues), see Phobius details amino acids 518 to 534 (17 residues), see Phobius details PF12805: FUSC-like" amino acids 88 to 297 (210 residues), 27.3 bits, see alignment E=4e-10 PF04632: FUSC" amino acids 369 to 681 (313 residues), 72.3 bits, see alignment E=7.1e-24 PF06081: ArAE_1" amino acids 372 to 505 (134 residues), 30.2 bits, see alignment E=8.7e-11 PF13515: FUSC_2" amino acids 381 to 504 (124 residues), 93.4 bits, see alignment E=2.4e-30

Best Hits

Predicted SEED Role

"FIG01212390: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (698 amino acids)

>LRK55_RS02090 FUSC family protein (Rhodanobacter denitrificans MT42)
MRPSGYSLRAHAIESLTDIKRPDVPLRVVLRNTAAVILPLAVGMATGHPQIGLGVAAGAL
DTMFSDQPGPYRQRMRQLLLASLAAGLAALVGFLIGGQLLPILLATAACGFFGGMLVVFG
ADTARVGMTSMILLVITASTPTSPSHALGGAALIFAGGVLLTAFSLAAWPLQRYWPERIE
LARVYAGLAALAREQAHDDAEVPALTEAMTSLQRTLLGRHRAHGRAMEAFGVLLELAERI
RLELTAMAELHANPAIHAMFRDDAARVLAAIAEALQQGDPPERADRALQTLRASERALLD
GGGNADGLTAHIHALAGQLAAAVRNADWAGSRGELRASAAETRLPNSLRSSSTWATLRAN
LTPRSVAFRHAVRMAVCLSAALWISRLLQLPHGYWLPMTAAIVLRPDFAATFNFGLLRVL
GTVLGLVLTTVLLHVTPDEPWAHLALMALLCMAFRYLAGAHYGIAVAALTGTVVILLSFE
GVNPGLAVSDRVLNTALGCGMALLAYVAWPTWERGRARAALAVMLDAYASYLRALAQPDR
GGNRNDTRTAARTARTNAQASIDRMRTEPATPPELLALARALFANGNRLARTAMTLEATL
GDLAALPAADAIGRFVERNADAVQAIATALRERQPPGALPKLRAMQRELVTSMQGVGDRA
AFELLARISDRLVDNVDTLAHVTKRGLSELAAAEPPVA