Protein Info for LRK55_RS01380 in Rhodanobacter denitrificans MT42

Annotation: histidinol-phosphate transaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 212 to 233 (22 residues), see Phobius details TIGR01141: histidinol-phosphate transaminase" amino acids 8 to 350 (343 residues), 353.5 bits, see alignment E=5.3e-110 PF00155: Aminotran_1_2" amino acids 45 to 347 (303 residues), 186.6 bits, see alignment E=8.1e-59 PF00266: Aminotran_5" amino acids 61 to 183 (123 residues), 26 bits, see alignment E=4.5e-10

Best Hits

Swiss-Prot: 57% identical to HIS8_XANC5: Histidinol-phosphate aminotransferase (hisC) from Xanthomonas campestris pv. vesicatoria (strain 85-10)

KEGG orthology group: K00817, histidinol-phosphate aminotransferase [EC: 2.6.1.9] (inferred from 57% identity to xcv:XCV1876)

Predicted SEED Role

"Histidinol-phosphate aminotransferase (EC 2.6.1.9)" in subsystem Histidine Biosynthesis (EC 2.6.1.9)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.6.1.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>LRK55_RS01380 histidinol-phosphate transaminase (Rhodanobacter denitrificans MT42)
MSVLDLARPEIRAMQPYSSARMEASGGEVLLNANESAWAPVGDDGLGCNRYPEPQPAALV
EALATLYGVRREQLLVGRGSDEAIDLLVRAFCRAGRDAVLIQPPTFGMYAVCARVQDAGI
VEVPLAADATLDVDAVLAALTPAVKLVFVCTPNNPTGQPVPRTELERLVQALAGRALLVV
DEAYVEFADEGSVADLIDRYDNLAVLRTLSKAWALAGVRIGSLLASAGVIALLRRIMAPY
PLPLPSVDAALLALSGWGQANAREHLAVVRAERTRMCEALRWLRNVREVLPSQANFLAVR
FDDAAGAYQRLLAAGIVVRDVRRYLNLGDALRITIGTPAENERVLAVLQETSP