Protein Info for LRK54_RS17880 in Rhodanobacter denitrificans FW104-10B01

Annotation: Tn3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 985 PF13700: DUF4158" amino acids 3 to 163 (161 residues), 107.1 bits, see alignment E=9.3e-35 PF01526: DDE_Tnp_Tn3" amino acids 580 to 967 (388 residues), 487.1 bits, see alignment E=3.4e-150

Best Hits

KEGG orthology group: None (inferred from 66% identity to xop:PXO_00623)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (985 amino acids)

>LRK54_RS17880 Tn3 family transposase (Rhodanobacter denitrificans FW104-10B01)
MASIERTAYPRFKRHPSTDELEQIYTPTDDELSLATRQVREPARRLSFLLLLKGFQRLGY
FPVVDDVPLAIMRCVRDALRLSGHARPAVLEPRTLYRYHAAIRRWLGVTAFRDRGMHVAA
RAMGTAAQVMDHPADLINASIEQLIKDKIELPAFSTLDRMARRIRALVNQRLFNLVQQRL
SPSDISQLDALLDVESGRRQSPLQLIKQLPKRSSLQHFQRLIEHIARLSNLVGEAHLLAG
VPETKIKHFAAEAKALDAAELRDFGPPKRHLLLLSLIHRARIQARDDLAAMYIKRMNNLH
RRGKEELDRLRVRHREKTETIVATLTDVIQVLDTHPSDTEAGREIRQLLSKRGGIEVLQE
DCAAINAYSGDNYYPLLWKFFKSHRPTIYRMVRLLELSTTSEDRSLVEALALVLEHESRR
GDWIDEPVDLAFANERWRRVVSHRAEDGTVRLHRRHLEVCVFSCLANELKTGDMAIGGSE
EYADYRGQLLTWDECESRLADYCGQLGLPADAALFVAQLREELTRTAEEIDAAYPDNNQI
VIDDRGVPVLKRVVAKEPTESAKALETAILQRMPERNILDILCNVAHWVNFPRHFGPLSG
SDPKLERATERYVLTTFTYGSNLGPVQAARHFRGAVTPHMLSFVNRRHINGKKLDLAIKD
IINAYNTLHLPKVWGDGKSAAADGTKYDMRDQNLMAEYHIRYGGYGGIAYHHVSDTYVAL
FSHFIPSGVWEAIYIIEGLLKNKSDIQPDTVHADTQGQSAPVFALSHLLGIKLMPRIRNW
QDLKFFRPSAETRYEHIDSLFKDTIDWALIETHWKDLMRVVLSITAGKISSVTLLRKLGN
NSRKNRLYQAFRELGRVVRTNFLLRYISDLDLREKITASTNKVEAYNGFAKWNFFGGEGV
IADNDPEEQEKTVKYNDLVTNAIIFSNAVDLTRILRELATEGLKPKREDVAIMSPYMTGH
IKRFGDYLIDIEAVPDPFVVELMLE