Protein Info for LRK54_RS16875 in Rhodanobacter denitrificans FW104-10B01

Annotation: kinase/pyrophosphorylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 PF03618: Kinase-PPPase" amino acids 5 to 260 (256 residues), 246.5 bits, see alignment E=1.8e-77

Best Hits

Swiss-Prot: 59% identical to PSRP_XANC5: Putative phosphoenolpyruvate synthase regulatory protein (XCV2203) from Xanthomonas campestris pv. vesicatoria (strain 85-10)

KEGG orthology group: K09773, hypothetical protein (inferred from 59% identity to xac:XAC2042)

Predicted SEED Role

"FIG137360: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>LRK54_RS16875 kinase/pyrophosphorylase (Rhodanobacter denitrificans FW104-10B01)
MQRTVFFISDSTGITAETIGNSILAQFEGVRFDKHRLPFTDNAHKAEAAALRIKTNYAQS
GQRPIVVNTMADRALCEIVAASGALMLDVFAPFIGPLEDELGSKRTGLVNRSHGLVDFDK
YEARINATNYALTHDDGIDVNYAEADLILVGVSRSGKTPTCLYMALHYGVRAANYPLTDE
DLEKLELPARLGPYRDRLYGLTIDPVRLAQIREQRRAGSRYATLQQCRWELEQADRLMRQ
AGIPSLNTTHVSIEEIASKIFDRFGIERTMF