Protein Info for LRK54_RS16205 in Rhodanobacter denitrificans FW104-10B01

Annotation: DNA internalization-related competence protein ComEC/Rec2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 766 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 44 (16 residues), see Phobius details amino acids 51 to 69 (19 residues), see Phobius details amino acids 241 to 267 (27 residues), see Phobius details amino acids 279 to 309 (31 residues), see Phobius details amino acids 327 to 359 (33 residues), see Phobius details amino acids 372 to 395 (24 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details amino acids 433 to 451 (19 residues), see Phobius details amino acids 463 to 484 (22 residues), see Phobius details amino acids 491 to 507 (17 residues), see Phobius details PF13567: DUF4131" amino acids 25 to 177 (153 residues), 96.1 bits, see alignment E=2.8e-31 TIGR00361: DNA internalization-related competence protein ComEC/Rec2" amino acids 117 to 738 (622 residues), 369.7 bits, see alignment E=2.5e-114 PF03772: Competence" amino acids 218 to 487 (270 residues), 196.1 bits, see alignment E=1.1e-61 TIGR00360: ComEC/Rec2-related protein" amino acids 238 to 418 (181 residues), 98.9 bits, see alignment E=4.1e-32 PF00753: Lactamase_B" amino acids 521 to 708 (188 residues), 55.2 bits, see alignment E=1.4e-18

Best Hits

Predicted SEED Role

"DNA internalization-related competence protein ComEC/Rec2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (766 amino acids)

>LRK54_RS16205 DNA internalization-related competence protein ComEC/Rec2 (Rhodanobacter denitrificans FW104-10B01)
MARLGAITAASALLGGVLLVQWLPQLPPYWSLVLVLLAAAWLAWRCPRWRWLAWLLFGIA
WAAWRGGVAMDARLPRVLEGRDFVVVGTIADLPLAQPDASRFTLQAEQVTLDGQPIALHG
RITVAWYEDAPPLRPCSRWRLSLRLRRPRGLLDPGGADSERSALQRGIVATGYVRDVADN
APLAGTPWCVDGVRDAVARGIAVRVHDRHDAALLQAFTVGDTRGLQQRDWAVARANGVSH
LIAISGFHVGVAAVFGVWLAWLVYALWPRLGLWLPRPQAQAAAALLVAAMYSALAGFGLP
TVRTLLMIAVVALARCSRRGSSGAQSLALALIAILLADPLAVLAAGFWLSFVGVAFLMLC
LQSRGRGVRAFLHELSAGQLLMTVALLPLTLWFFGQASLVGALSNLIAVPVVSFVIVPCA
LLGMLLLGLCPPLAAPVLWLAARIAHAQWWLLEQMATWPGAHWYLPAVQAPALLLAVLGA
LWLFLPRGVPLRGLGLLLFLPLLWPPLPRPVEGAFQVWVLDVGQGLSVLLRTRDHALVYD
AGARYPSGFDVGEAVVLPSMHALGIDHLDMLVISHGDNDHAGGAEAVANAFPQAQRYAGE
PSRVRVPMRQCVAGQAWQWDGVRFRVLNPPRGAGDRDNDSSCVLLVEGRGGRLLLPGDIS
SAAEPLVAAALGPGPAPVLLVPHHGSRTSSGAAFIAAVRPRLALVSAGWRNRFGHPRPEV
LARYAAARVPVFDTAGQGAMALDFPADAPPRREPGWRQRQARYWRE