Protein Info for LRK54_RS16020 in Rhodanobacter denitrificans FW104-10B01

Annotation: Fic family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF13784: Fic_N" amino acids 27 to 107 (81 residues), 93.2 bits, see alignment E=1.2e-30 PF02661: Fic" amino acids 147 to 212 (66 residues), 55.1 bits, see alignment E=1.7e-18 PF21248: SoFic-like_C" amino acids 277 to 352 (76 residues), 112.4 bits, see alignment E=1.4e-36

Best Hits

Swiss-Prot: 60% identical to SOFIC_SHEON: Protein adenylyltransferase SoFic (fic) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: None (inferred from 69% identity to xca:xccb100_0234)

Predicted SEED Role

"MloA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>LRK54_RS16020 Fic family protein (Rhodanobacter denitrificans FW104-10B01)
MPFDPQRPHDDLPVLPPAADIESRPLLKACIEARTALAELKSVGAAIPNQAVLINTIPLL
EAQASSEIENIVTTSDALFRFAQDEQAADPATKEALNYRAALREGFDSLAERPLGTGTAV
RVCSRLKNRDMDVRRVPGTALKNAATGEVVYTPPQGEALLRGKLANWERFIHDATDIDPL
IRMAVAHYQFEAIHPFLDGNGRTGRVLNLLMLVEQGLLDQPVLYLSRHILRHRIDYYRRL
LAVTRDGAWQDWIAFMLDAVAQTARWTGDKIRAIQALHAQATDFVRMHAPKIYSRELVDA
LFVQPYCRIQNLVDGGIAKRQTASVYLKQLADLGMLVEVKVGREKLFLHPNFVRLLTSDD
HPVLPYGSTASRKD