Protein Info for LRK54_RS13205 in Rhodanobacter denitrificans FW104-10B01

Annotation: putative O-glycosylation ligase, exosortase A system-associated

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 43 to 63 (21 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 198 to 229 (32 residues), see Phobius details amino acids 236 to 253 (18 residues), see Phobius details amino acids 332 to 352 (21 residues), see Phobius details amino acids 364 to 386 (23 residues), see Phobius details amino acids 397 to 416 (20 residues), see Phobius details PF19358: DUF5935" amino acids 1 to 186 (186 residues), 91.5 bits, see alignment E=6.4e-30 TIGR03097: probable O-glycosylation ligase, exosortase A-associated" amino acids 2 to 405 (404 residues), 483.5 bits, see alignment E=2.5e-149 PF04932: Wzy_C" amino acids 200 to 339 (140 residues), 74.5 bits, see alignment E=7.9e-25

Best Hits

KEGG orthology group: None (inferred from 44% identity to tbd:Tbd_0297)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>LRK54_RS13205 putative O-glycosylation ligase, exosortase A system-associated (Rhodanobacter denitrificans FW104-10B01)
MRDIAFALIMLGLIPLAAMRPYIGLLVWSWLGYMNPHRLTFGFAYGFPWVMLIAVVTLLS
LGVGKENKRIPRSTVSVLLMMFLLWTGLTTFFAVLPDAAWVSWQTFAKIMVMVFVTLMLI
NSRERMHWLIWVIVISLGYYGLKGGLFTIISGGGNRVFGPAGSFIGDNNDLAQALCMVLP
LMRYLQLQTSRKMVRIGLGLAMFLTGAAILGTYSRGGLIALMVVSAALFLKSRKRLTLAI
ALMAIGLTAYHFMPPQWTARMDTIHHVEDVNTVQSRVQSWEFATNVALHRPLTGGGFKVY
ESEALWNRYAPEEAVQRAVHSIYFRVLGEQGFPGLAIFVGLLVASWRSCAYVRHKSRHLP
NEKWAFDLASMLQVSLLAFMTAGLATTSSYFDLSYQLMAMCALLKGLLPEGVVAYAGSAG
AAATQPHLLGRGQAEHSFGKP