Protein Info for LRK54_RS12800 in Rhodanobacter denitrificans FW104-10B01

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details PF07681: DoxX" amino acids 6 to 85 (80 residues), 67.8 bits, see alignment E=5.6e-23

Best Hits

Swiss-Prot: 50% identical to YQJF_ECOLI: Inner membrane protein YqjF (yqjF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 60% identity to asa:ASA_4023)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (129 amino acids)

>LRK54_RS12800 DoxX family protein (Rhodanobacter denitrificans FW104-10B01)
MNAPLTLFGRVGLSLIFIISGWGKIAAYAGTQQYMASAGLPGSLLPLVIALELGGGLAVL
TGAFTRWIALALAVFSLASAALFHAHLGDAAQAINFWKNVAMAGGFLMLAAQGAGTLSLD
HLRSKRRNA