Protein Info for LRK54_RS12570 in Rhodanobacter denitrificans FW104-10B01

Annotation: NmrA family NAD(P)-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF05368: NmrA" amino acids 6 to 91 (86 residues), 44.5 bits, see alignment E=2e-15 PF01370: Epimerase" amino acids 6 to 107 (102 residues), 26.9 bits, see alignment E=4.8e-10 PF13460: NAD_binding_10" amino acids 10 to 189 (180 residues), 51.5 bits, see alignment E=1.7e-17

Best Hits

KEGG orthology group: None (inferred from 73% identity to rfr:Rfer_1765)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>LRK54_RS12570 NmrA family NAD(P)-binding protein (Rhodanobacter denitrificans FW104-10B01)
MTLPRILITGATGKTGVQAVKQLLEKGFPVRALVHRTDARSASLQSLGAEIQVGDLHDIE
DMRRALKDVQRAYYCAPMLRNALGASMVFAAAAQERHLEVVVALSQWLADPRHTSVHTRE
TWLADQALSWMPDVDLITLNPGWFADNYMAAIEPIAQFGMMPMPLGEGLNAPPSNEDIAR
VAVTALTNPADHIGKIYRPTGPVLLSPRDIAATFAKVLGRPVKYSDAPAGLFTKVARALG
FPDYAIAQVLCYFQDYKRGAFAVGAPTQAVLEITGQRPETFETIVRRYASESPFARRTAG
SMLRAMGGMLRIMLTPSLDTAAYARSHDVPTLRDPHLSADSADWLASHSEPSTRPHQVLS
VTLAT