Protein Info for LRK54_RS12480 in Rhodanobacter denitrificans FW104-10B01

Annotation: stage II sporulation protein M

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 107 to 128 (22 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details amino acids 261 to 285 (25 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details PF01944: SpoIIM" amino acids 143 to 289 (147 residues), 103.3 bits, see alignment E=7.1e-34

Best Hits

KEGG orthology group: None (inferred from 58% identity to smt:Smal_3844)

Predicted SEED Role

"FIG01248689: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>LRK54_RS12480 stage II sporulation protein M (Rhodanobacter denitrificans FW104-10B01)
MKQERFVALHSREWDGLQSWLNALDRQPKRTLRQEPALEFPQSYRRVCHHLALARGRGYS
HEVTERLQRLVQQGHRVLYRPPAPRWHRVAAFLVAGFPRLVRAQWRCMALAAALFYLPAL
CLLVLLQLRPELAHTLFSSTQLTQFEKMYDPANAHIGRSSGTDLQMFGYYVMNNVSIAFR
TFASGLVFGVGAIYVLGANGVLIGGIAGHLTAIGYGGPFWRFVVGHSAFELSALVIAGGA
GLQLGLTLLAPGRQRRGPALVAAGWVGAQLALGAFAMLLVAAFIEAYWSSIAALPDALKF
GSGALLWLLVLGWLWRGGRADTHGA