Protein Info for LRK54_RS11260 in Rhodanobacter denitrificans FW104-10B01

Annotation: DUF924 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF06041: DUF924" amino acids 8 to 188 (181 residues), 222 bits, see alignment E=3.3e-70

Best Hits

KEGG orthology group: None (inferred from 50% identity to tbd:Tbd_0861)

Predicted SEED Role

"FIG027190: Putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>LRK54_RS11260 DUF924 domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MRATAQDVLDFWFAGASAAHWFAADTGFDAQIRERFGEAARAAADGRLDDWAATPPGWLA
LLILLDQFPRNLYRDDPRAWAADASAQRVALSGLARSDDRQLPAVQRVFAYLPLEHAENI
ALQQRSVALFEALLADAAPEQHRQLENYLDYARRHREVIVRFGRFPHRNAALGRSSTPEE
ILYLAQPGAGF