Protein Info for LRK54_RS11135 in Rhodanobacter denitrificans FW104-10B01

Annotation: aspartyl/asparaginyl beta-hydroxylase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 PF13432: TPR_16" amino acids 18 to 78 (61 residues), 31.4 bits, see alignment E=9e-11 amino acids 83 to 138 (56 residues), 35.6 bits, see alignment 4.4e-12 PF14559: TPR_19" amino acids 21 to 80 (60 residues), 26.7 bits, see alignment E=2.3e-09 amino acids 89 to 148 (60 residues), 33.4 bits, see alignment E=1.9e-11 PF13181: TPR_8" amino acids 82 to 110 (29 residues), 13.2 bits, see alignment (E = 3.4e-05) PF13176: TPR_7" amino acids 82 to 108 (27 residues), 19.3 bits, see alignment (E = 3.7e-07) PF05118: Asp_Arg_Hydrox" amino acids 246 to 410 (165 residues), 153.6 bits, see alignment E=1.7e-48

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>LRK54_RS11135 aspartyl/asparaginyl beta-hydroxylase domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MSVSPTPDPVSSLRETVRAQLQGGQMAAAESSYRQLLEHEPDDVDALVFLADRELARRNA
PQAILLLSRAERAHPDHPGVAHQLGSVHLASGDFEAAASHLQRALAAAPSMFLARLRLGI
ALEQLGRAEQALTAYFMAVRSAQEQGRWLSDATTAPGLRELVKYAMNYANAGRQRLFDAA
LEPLRERYGRSELRRVDRALAIHLGLEPMPSTDPRQRPLFLYFPDIPSQPFYPRERFPWH
ETLEAAAAAVREELLAVLAGEQVLESFLGVDDPTQAQSMLRGSDGHAAAWDAYFFHRHGD
RYEDHCAACPRTSAVLDAVPLVRIRDHAPEALFSVLRPGTHILPHRGVTNTRLVTHLPLI
VPSDCALRVGGQIHSWREGSCVTFDDTFEHEAWNRSQFTRVVLILDSWNPDLSEAEQAAV
TDLVEAIGDFNASCAVTADPA