Protein Info for LRK54_RS10910 in Rhodanobacter denitrificans FW104-10B01

Annotation: transcription termination factor Rho

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 599 TIGR00767: transcription termination factor Rho" amino acids 182 to 598 (417 residues), 681.9 bits, see alignment E=1.5e-209 PF07498: Rho_N" amino acids 185 to 228 (44 residues), 53.2 bits, see alignment 3.6e-18 PF07497: Rho_RNA_bind" amino acids 232 to 306 (75 residues), 115.5 bits, see alignment E=1.1e-37 PF00006: ATP-synt_ab" amino acids 341 to 544 (204 residues), 95 bits, see alignment E=8e-31

Best Hits

Predicted SEED Role

"Transcription termination factor Rho" in subsystem Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (599 amino acids)

>LRK54_RS10910 transcription termination factor Rho (Rhodanobacter denitrificans FW104-10B01)
MSDTENRTPNDAPGADARAVAENKPEPRPRAPRRTAAATAAANAEKAAVADRPVAPTPAP
ATPAAVPVQASLPAMPAEPAITRPAPEPRDFAAPTGQNQNQDSPAGQNPGQPQNPNQGQN
PNGSQNNGGREGREGRGRRRRNERGGNPNQQQGRPQHPRPNPNGLPVDDDNADPGSNDRV
INLTELKRMKAPQLLEFAESLGVYEGVARARKQDVIFNVLKAHARSGGGIWAEGVLEILQ
DGFGFLRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPKEGERYFAMLRVDDI
NGDPPEASKNKMLFENLTPLFPRKAYKLERGNGSSEDITGRILDLIAPIGKGQRGLIVSQ
PKSGKTMMLQNIAQAIQYNHPEAHLIMLLIDERPEEVTEIARTVRAEVISSTFDEPAVRH
VQVAEMVIERAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKR
FFGAARNVEEGGSLTIIATALTETGSKMDEVIYEEFKGTGNMEVHLSRRISEKRVYPAID
INRSGTRREDLLIDPDMLAKIWILRKLLHPMDELAAMEFMLDKMKNTKSNDEFFNSMKR