Protein Info for LRK54_RS10185 in Rhodanobacter denitrificans FW104-10B01

Annotation: RDD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 143 to 163 (21 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details PF14237: GYF_2" amino acids 5 to 47 (43 residues), 47 bits, see alignment 1.8e-16 PF06271: RDD" amino acids 85 to 231 (147 residues), 92.7 bits, see alignment E=2.6e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>LRK54_RS10185 RDD family protein (Rhodanobacter denitrificans FW104-10B01)
MEIWIGRDGERHGPYKEDDVRQWLRSGQVSPADLAWHEGLADWQPLSVLFPDVAVAPPPA
TANPYAAPAAPLLPQTTAAALEDHAGFWKRVAAYILDAIVLYIPQVLIEKAFGGDAAKAA
LKQASLDAVGNPDAMMAANMHYYSTMWPAMLLIVVLGVLYFTVCESSAWQGTLGKLALGI
RVTDLEGRRISFPRALGRYFAKILSAIILGVGFLMVAWTQRKQGLHDMICGTLVLNGRAS
EFKASPSTADSRNSFSA