Protein Info for LRK54_RS09290 in Rhodanobacter denitrificans FW104-10B01

Annotation: regulatory signaling modulator protein AmpE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 46 to 64 (19 residues), see Phobius details amino acids 72 to 89 (18 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 266 to 287 (22 residues), see Phobius details PF17113: AmpE" amino acids 27 to 212 (186 residues), 22.1 bits, see alignment E=4.7e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (288 amino acids)

>LRK54_RS09290 regulatory signaling modulator protein AmpE (Rhodanobacter denitrificans FW104-10B01)
MAIRLLVALVALGLLHVMPQLARWRGDSLFRRWVAQLADTGGGGRVALALLLPLFLCALL
EWLLGRSPLGELLPLLFALTVLLYCFGPREFESDLESILDAPDGARREAAAQALADDGQP
IAWNAPALGEAIAYAALRRRFAVLLWFFLLGPVGALGYRLAQTLGRDALRLDPDSRRAAD
HVANALDWLPAQLLTFTLAVVGHWEAVIGAWRRWHKQAAATSWYAAGPGFLGAAAQADVL
IDIEAGDGYAEEHGDPLAELRRLRSALLRALLAWLSVVALVVIGGWIG