Protein Info for LRK54_RS08465 in Rhodanobacter denitrificans FW104-10B01

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF13432: TPR_16" amino acids 344 to 405 (62 residues), 22.6 bits, see alignment E=4.4e-08

Best Hits

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (421 amino acids)

>LRK54_RS08465 tetratricopeptide repeat protein (Rhodanobacter denitrificans FW104-10B01)
MLAGIALLLGVASSPALARKSDDAKPKKEVLYPNATRVEPKLDLSSVKDQKNLNDGLDAV
NEGDKAKAEQLLQPIIDGSKSKYAQALALQGMASLHYNDGDTKGAIAALQRSLALGVMPN
DTYFQLMYMLAQFQLADEQYQAALDTIAKWRAEGKKETADSYALEGNADYRLGKYPEAIA
AITKAKSLTDKPQPTWDQILMASYAESGQDDKAAALATSQLSSNPDDPNVLNNAVAVLMQ
AHKYPEAIQMLEKARAAGKLGKDTQYVNLAKLYLISGQDSSDPAPNALKAQQVLEDGIGK
GVLKPDAETYVLLGQSAEIGNNIDKAIGYYNKAIPLASNGEAALRAGRLLLSENKYSQAK
GLVQQAIDKGVQHKGTAYMLLAESERGLKNKPAAIAAMKKAAQDPETAAKARDWLKKTGA
E