Protein Info for LRK54_RS07640 in Rhodanobacter denitrificans FW104-10B01

Annotation: alpha-2-macroglobulin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1664 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF17970: bMG1" amino acids 57 to 150 (94 residues), 27.5 bits, see alignment 1.2e-09 PF21142: A2M_bMG2" amino acids 161 to 298 (138 residues), 111.3 bits, see alignment E=1.3e-35 PF11974: bMG3" amino acids 300 to 394 (95 residues), 70.8 bits, see alignment 3.8e-23 PF01835: MG2" amino acids 400 to 486 (87 residues), 66 bits, see alignment 1.5e-21 PF17972: bMG5" amino acids 501 to 627 (127 residues), 114.9 bits, see alignment 1.5e-36 PF17962: bMG6" amino acids 633 to 746 (114 residues), 91.4 bits, see alignment 2e-29 PF07703: A2M_BRD" amino acids 762 to 905 (144 residues), 75.8 bits, see alignment E=2e-24 PF00207: A2M" amino acids 979 to 1057 (79 residues), 37.8 bits, see alignment 6.2e-13 PF17973: bMG10" amino acids 1516 to 1646 (131 residues), 86.2 bits, see alignment E=9.9e-28

Best Hits

KEGG orthology group: K06894, (no description) (inferred from 50% identity to psu:Psesu_1331)

Predicted SEED Role

"Alpha-2-macroglobulin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1664 amino acids)

>LRK54_RS07640 alpha-2-macroglobulin family protein (Rhodanobacter denitrificans FW104-10B01)
MSRRSYECLSRRVLSRVLISLLLGLLLAACHRGPDHGKPVLQGAPAGSASAPAPARTEFA
LVSASSQASDSRTALTLRFNATLASAQAFDTLIAVTGPNGEAVSGSWSLDNDGKTLSFPF
VQANTRYAVQLKAGLLAADGRTLGHEVKHDVYSGNLPAAVGFASHGSVLPARGTRGLPLV
SMNVHDADVEFFRVRDDALSDLFCSYPRNGHRDSYELDHDVAYYNSCGEGDERRSRVPIT
QLADSVYANHYTLGGEPNERTVTYLPVQNIKELATPGVYMAVVKAGGTFKDGYDTATFFV
SDLGLHLRVYRDNVLLHVASLRDGTPVNAVDIEIRDAAGRSKLKATTGADGNALLAYKVK
ASDVLVARHGKDVSVLPFNRPALDVSNFDISGRRQAPFEVYAWSGRDLYRPGETLRASAL
LRDDDGKPMKAQSLFVRVKQPDGRTLVEKRLEPQQLNYFELSQAIPADAPTGLWQLEFRL
DPSAKETVQAFPFHVEEFLPERLKVDLSSPQQRLAPGEPLKLKVASSYLYGAPADGNRFT
AKLLVAPDVHPVAAMKDTFFGNPLVELPKSADDVVDAKLDAQGVLEQDVALPDDVKPVAP
LAVTLSGSVYESGGRAVTRLLKRTYWPADALVGVRPLFDPKQGAESESPVGFEIVRANAD
GQLVAGAHLKVRLQRELRDFYWLYERSGGWQSNANQRLQLIEEKDIDVAAGKSAHVEFPV
QWGSYRVEVYDPATKLTTVFPFFAGYSWDDENLGKEARPDKVKLQLDKARYRAGDRMKVT
VTPPHDGPGVLLVESDHLLYTKNIDAKAGATFEIPVTKEWERHDVYVTALVFRGGEAAEH
TTPARAMGVEYVAMDRNDRRVPLKLDAPALMRPGNPLEVGVQATGLAGQQAFVTLSAVDQ
GVLNITNYPVPDAWAWLFAKRALSVDAYDLYSRLIEAMDGVEAKLRYGGDMSGAALPKAT
RLNPKVQIVDLFAGPVAFDAQGKATLHVDVPDFNGSLRLAALAYTDSRYGNADGAVTVRA
PLVVEPSTPRVMAAGDKAMISLDLKNLSGKDGTAKVSVKGGGPITVDKAVQSVPLKDGAG
TTVHMPVTAQAGAAVAAVDIHAELNDYQVDRHFEFAVRPAWPETVSTAPMALEAGKPERF
GAAAVAGLLPATVNARLTLSTLPPLPYAAALRDMLRYPYGCIEQTTSKGYAALILDGQTA
KALGAQVMSDAVRKAAVDGALSRIASFQASNGHFSFWGGSSPIVTFTTPYVVDFMLDARD
AGFAVPQDVLQKSLQRLNDDLLAGGHPYYEYEQHDHLRIADEAYSGFVLARVNRAPLGTL
RAIFDNERQKLVAPLPLVHLGIALKLMGDTERAQKAVDEAFAWSKERPWYVGDYGSDLRD
LALMVALTHTYGMSKPAYDTKLVDWARNASANVRVRQQQDKDYRWSWSYLSTQEQAAIAR
VAAAFDAKSNAPLAATLTVNGKTEPAPDQRVWSRALSVAELSAGVSVQPTSDAAIFATLD
VAGIPQQAPPADARQIDVRRSWFTTDGKPWSGSQLKEGDTLIVELSIEARMNVPDALVTD
LLPGGLEVENLNLGGAQSWSGVVIDGIELDQHAAAQIVHEEYRDDRYAAALNLSRGDQAR
VFYLVRAVTPGTYSVPPPLVEDMYRPAVRGIGKAEPAKLTVVEP