Protein Info for LRK54_RS06950 in Rhodanobacter denitrificans FW104-10B01

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 32 to 55 (24 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details amino acids 243 to 268 (26 residues), see Phobius details amino acids 283 to 309 (27 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details amino acids 342 to 360 (19 residues), see Phobius details amino acids 367 to 389 (23 residues), see Phobius details PF12679: ABC2_membrane_2" amino acids 16 to 340 (325 residues), 77.5 bits, see alignment E=2.2e-25 PF12698: ABC2_membrane_3" amino acids 41 to 385 (345 residues), 85.7 bits, see alignment E=6.8e-28 PF12730: ABC2_membrane_4" amino acids 188 to 312 (125 residues), 28.8 bits, see alignment E=2.4e-10 PF01061: ABC2_membrane" amino acids 192 to 328 (137 residues), 29.9 bits, see alignment E=7.9e-11

Best Hits

KEGG orthology group: K09696, sodium transport system permease protein (inferred from 42% identity to sml:Smlt4510)

Predicted SEED Role

"ABC-type Na+ efflux pump, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>LRK54_RS06950 ABC transporter permease (Rhodanobacter denitrificans FW104-10B01)
MSTNPSKTRRGGAFLSVFLKEVTENLRDRRTLMSAFLTGPLLGPLLFVMLINLTLNRELD
KAEKPLSVPVIGAEYAPNLLDALKAGGVVPGAPVADPARTVRQQDADVVLRIGADYGKAW
RRGEPVQVELFYDSSQREANSSVERVSQLVESYARQQGAMRLVARGMSPGTAWPLQVARR
DQATPQSRAVLMFAMLPYFFVITIFMGGMYLAIDLTAGERERQSLEPLFANPVPRWKILC
GKLAAICAFSVASLLITLLAFAVVGQFIPAGKIGMELDLGLRFATYVLLLMLPLVLLLAA
LQSMVAAFAKSYREAQTYISLLMLVPIIPSLLLSFMPIKAQAWMYAVPLLGQNLGIMQLL
RGDGVSAAQLGLCFAGTLAAALLAVLATAQLYRSEKLAISA