Protein Info for LRK54_RS06900 in Rhodanobacter denitrificans FW104-10B01

Annotation: serine/threonine protein kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 PF01636: APH" amino acids 33 to 258 (226 residues), 129.8 bits, see alignment E=7.5e-42

Best Hits

Swiss-Prot: 43% identical to SRKA_ECOLI: Stress response kinase A (srkA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 58% identity to cvi:CV_1007)

MetaCyc: 43% identical to stress response kinase A (Escherichia coli K-12 substr. MG1655)
2.7.11.d,2.7.11.11,2.7.12.1,2.7.11.12,2.7.11.17,2.7.11.1,2.7.11.13,2.7.11.22,2.7.11.21,2.7.11.34,2.7.11.31 [EC: 2.7.11.1, 2.7.11.11, 2.7.11.12, 2.7.11.13, 2.7.11.17, 2.7.11.21, 2.7.11.22, 2.7.11.31, 2.7.11.34, 2.7.11.d, 2.7.12.1]

Predicted SEED Role

"YihE protein, required for LPS synthesis"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.11.1

Use Curated BLAST to search for 2.7.11.1 or 2.7.11.11 or 2.7.11.12 or 2.7.11.13 or 2.7.11.17 or 2.7.11.21 or 2.7.11.22 or 2.7.11.31 or 2.7.11.34 or 2.7.11.d or 2.7.12.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>LRK54_RS06900 serine/threonine protein kinase (Rhodanobacter denitrificans FW104-10B01)
MNAAPYASLSPDLVLDAVSACGLWPDGRLLALNSYENRVWQVGIEDAAPVIAKFYRPCRW
SDAAIVEEHAFTQELADAELPVVAPLAFDGRTLLHHGGFRYALTPRRGGRAPELEAIDQL
QWLGRLIARLHLIGARAPFVHRGRLDRDTMVQQPMLAVLASSLLPTALQTNYRAAATRLD
EAIAARLEALGPLRQLRLHGDCHPGNVLWTDAGPHFVDFDDARSGPAVQDLWMLANDERA
LDAVLEGYRQFRDFDDGELALIPALRAMRQLHYAGWIAARWHDPAFPAAFPFAAEPRWWE
QHVADLHELADALA